GSE144734

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

In situ differentiation of iridophore crystallotypes underlies z... 2020 · 80 cites

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This zebrafish RNA-Seq with unavailable details shows high quality (95.3% Q30) but unusually short mean read length of 26 bp, suggesting potential small RNA enrichment. Metadata gaps limit interpretation.

Data type / assay

bulk-RNA-seq

Organism

Danio rerio

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 97 measured

pct q30 bases 95.3 measured

gc content pct 37.3 measured

mean read length 26 measured

mean base quality 34.2 measured

adapter content pct 4.92 measured

duplication rate pct 12.09 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.3 measured ×1 100%

mean base quality 34.2 measured ×0.6 100%

adapter content pct 4.92 measured ×0.4 84%

duplication rate pct 12.09 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0