Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE144946

GEO first seen 2020

Multi-model preclinical platform predicts clinical response of melanoma to immunotherapy

Organism
Mus musculus
Samples
54
Type
Expression profiling by high...
Submitted
2020-02-07

Although immunotherapy has revolutionized cancer treatment, only a subset of patients demonstrates durable clinical benefit. Definitive predictive biomarkers and targets to overcome resistance remain unidentified, underscoring the urgency to develop reliable immunocompetent models for mechanistic assessment. Here we characterize a panel of syngeneic mouse models representing a variety of molecular and phenotypic subtypes of human melanomas and exhibiting their diverse range of responses to Immun...

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Eva Pérez-GuijarroHoward H YangRomina E ArayaRajaa El MeskiniHelen T MichaelSuman K VodnalaKerrie L MarieCari SmithSung ChinKhiem C LamAndres ThorkelssonAnthony J IacovelliAlan KulagaAnyen FonAleksandra M MichalowskiWilly HugoRoger S LoNicholas P RestifoShyam K SharanTerry Van DykeRomina S GoldszmidZoe Weaver OhlerMaxwell P LeeChi-Ping DayGlenn Merlino
Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
other
Organism
Mus musculus
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
54 / 54 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 425808806924 reported
total reads 1866364302 reported
supplementary file types TXT, VCF reported
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently