Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE144957

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

78/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk-RNA-seq with 151 bp reads at 92.3% Q20 and 88.1% Q30 shows moderate quality typical of aging Illumina instruments. The 41.5% GC and 33.3 mean quality indicate accumulated errors; users should apply conservative mapping thresholds; sufficient for gene-level quantification but not for single-base variant or isoform-level studies.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.031 measured
pct q20 bases 92.3 measured
pct q30 bases 88.1 measured
gc content pct 41.5 measured
mean read length 151 measured
mean base quality 33.3 measured
adapter content pct 12.4 measured
duplication rate pct 45.53 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 78/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.1 measured ×1 91%
mean base quality 33.3 measured ×0.6 88%
adapter content pct 12.4 measured ×0.4 42%
duplication rate pct 45.53 measured ×0.4 66%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 96