GSE144994

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Amniogenesis occurs in two independent waves in primates 2022 · 101 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This human RNA-Seq with unavailable metadata shows good quality (91.9% Q30) and mean read length of 86 bp. Metadata unavailability limits assessment.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.003 measured

pct q20 bases 94.5 measured

pct q30 bases 91.9 measured

gc content pct 49.7 measured

mean read length 86 measured

mean base quality 34 measured

adapter content pct 0.15 measured

duplication rate pct 20.06 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.9 measured ×1 100%

mean base quality 34 measured ×0.6 100%

adapter content pct 0.15 measured ×0.4 100%

duplication rate pct 20.06 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0