Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE146596

GEO

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

29/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Drosophila melanogaster
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
24 / 12 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 126751770213 reported
total reads 1996203762 reported
n content pct 0.034 measured
pct q20 bases 76.6 measured
pct q30 bases 66.2 measured
gc content pct 40.1 measured
mean read length 57 measured
mean base quality 28.9 measured
adapter content pct 2.21 measured
duplication rate pct 51.29 measured
supplementary file types CSV, MTX, TSV, TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 29/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 66.2 measured ×1 0%
mean base quality 28.9 measured ×0.6 15%
adapter content pct 2.21 measured ×0.4 99%
duplication rate pct 51.29 measured ×0.4 53%
QC cost 47 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 94