GSE147761

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq (Homo sapiens). B grade, marginal—use with caution. High adapter contamination (32.57%) indicates incomplete trimming or technical artifact, risking systematic bias in expression quantification; trimming and adapter removal are mandatory preprocessing steps.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.001 measured

pct q20 bases 95.9 measured

pct q30 bases 90.7 measured

gc content pct 49.8 measured

mean read length 150 measured

mean base quality 35.3 measured

adapter content pct 32.57 measured

duplication rate pct 26.61 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.7 measured ×1 100%

mean base quality 35.3 measured ×0.6 100%

adapter content pct 32.57 measured ×0.4 0%

duplication rate pct 26.61 measured ×0.4 100%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 65

A urine extracellular vesicle lncRNA classifier for high-gra...⚑ 65/100 ⚑