Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE147927

GEO first seen 2021

A high-resolution protein architecture of the budding yeast genome

Organism
Saccharomyces cerevisiae
Samples
1,251
Type
Genome binding/occupancy pro...
Submitted
2020-04-01

The genome-wide architecture of chromatin-associated proteins that maintains chromosome integrity and gene regulation is ill defined. Here we use chromatin immunoprecipitation, exonuclease digestion and DNA sequencing (ChIP–exo/seq) to define this architecture in Saccharomyces cerevisiae. We identify 21 meta-assemblages consisting of roughly 400 different proteins that are related to DNA replication, centromeres, subtelomeres, transposons, and transcription by RNA polymerase (Pol) I, II and III....

Provenance — who produced it, who reused it

Linked to 7 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Matthew J RossiPrashant K KuntalaWilliam K LaiNaomi YamadaNitika BadjatiaChitvan MittalGuray KuzuKylie BocklundNina P FarrellThomas R BlandaJoshua D MairoseAnn V BastingKatelyn S MistrettaDavid J RoccoEmily S PerkinsonGretta D KelloggShaun MahonyB F Pugh
Reused by

6 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently