Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE149836

GEO first seen 2021

Chromatin accessibility changes of Fli1ko vs WT in CD8 T cells

Organism
Mus musculus
Samples
6
Type
Genome binding/occupancy pro...
Submitted
2020-05-04

Genetic deletion of Fli1 enhanced CD8 Effector responses

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Zeyu ChenE J Wherry
Reused by

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ATAC-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.079 measured
pct q20 bases 94 measured
pct q30 bases 91.3 measured
gc content pct 43.5 measured
mean read length 69.1 measured
mean base quality 33.8 measured
adapter content pct 0 measured
duplication rate pct 23.01 measured
How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.3 measured ×1 100%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0