GSE150259

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

ACME dissociation: a versatile cell fixation-dissociation method... 2021 · 115 cites

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This planarian RNA-Seq with unavailable details shows moderate quality (85.6% Q30) and long mean read length of 150 bp with extreme adapter content (49.45%), indicating substantial library contamination. Metadata gaps prevent assessment.

Data type / assay

bulk-RNA-seq

Organism

Dugesia japonica

Metrics (value · how obtained)

n content pct 0.018 measured

pct q20 bases 91.5 measured

pct q30 bases 85.6 measured

gc content pct 50.2 measured

mean read length 150 measured

mean base quality 34.1 measured

adapter content pct 49.45 measured

duplication rate pct 48.5 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.6 measured ×1 78%

mean base quality 34.1 measured ×0.6 100%

adapter content pct 49.45 measured ×0.4 0%

duplication rate pct 48.5 measured ×0.4 59%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0