Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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GSE150486

GEO first seen 2021

Cellular repertoires of the song motor pathway of songbirds

Organism
Lonchura striata
Samples
2
Type
Expression profiling by high...
Submitted
2020-05-13

Birdsong is powerful model for the neural mechanisms underlying motor skill learning. The success of this model is in part due to the experimental advantages of the song system, the anatomically and functionally discrete neural circuit dedicated to song. Despite a detailed understanding of the physiological and systems levels properties of this circuit, we still lack a comprehensive understanding of what cell types are present in each region of the song system and how these cell types compare to...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Bradley ColquittMichael Brainard

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Java sparrow RNA-Seq with unavailable details shows high quality (97.2% Q30) and mean read length of 28 bp, suggesting potential small RNA content. Missing metadata prevents platform identification.

Data type / assay
bulk-RNA-seq
Organism
Lonchura striata
Metrics (value · how obtained)
n content pct 0.02 measured
pct q20 bases 99.1 measured
pct q30 bases 97.2 measured
gc content pct 44.8 measured
mean read length 28 measured
mean base quality 38.8 measured
adapter content pct 0 measured
duplication rate pct 18.21 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.2 measured ×1 100%
mean base quality 38.8 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 18.21 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0