Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE150644

GEO first seen 2020

The stem cell pluripotency genes Klf4 and Oct4 regulate complex SMC phenotypic changes critical in late-stage atherosclerotic lesion pathogenesis

Organism
Mus musculus
Samples
22
Type
Genome binding/occupancy pro...
Submitted
2020-05-15

Background Rupture or erosion of advanced atherosclerotic lesions with a resultant myocardial infarction or stroke are the leading worldwide cause of death. However, we have a very limited understanding of the identity, origin, and function of many cells that make up late stage atherosclerotic lesions, as well as the mechanisms by which they control plaque stability. Methods and Results Using RNAseq and ChIPseq of advanced atherosclerotic lesions from mice, we provide evidence SMC-specific Klf4-...

Provenance — who produced it, who reused it

Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Gabriel F AlencarKatherine M OwsianySantosh KarnewarKatyayani SukhavasiGiuseppe MocciAnh NguyenCorey M WilliamsSohel ShamsuzzamanMichal MorkyChris A HendersonRyan HaskinsRichard A BailysAloke V FinnColeen A McNamaraEli R ZunderVamsidhar VenkataGerard PasterkampJohan BjörkegrenStefan BekiranvGary K Owens
Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Mus musculus
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
94 / 22 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 264885575548 reported
total reads 2698411291 reported
supplementary file types NARROWPEAK, TXT reported
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently