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Transcriptional profiling of ileal lamina propria lymphocytes of wild type and Lyz1KO mice by single-cell RNA-seq
Paneth cells express Lyz1, a gene encoding for lysozyme. To investigate the transcriptomic profiles of wild type and Lyz1-knockout mouse ileal lamina propria cells, we performed single-cell RNA-seq.
Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Shiyan YuIyshwarya BalasubramanianXiang LinJuan FloresNan Gao
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 2 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
92722360731
reported
total reads
1018927041
reported
supplementary file types
H5
reported
QC cost
14 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently