Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE151214

GEO first seen 2021

Single-cell Transcriptomics Identifies Transcriptional Networks Driving Differentiation and Tumorigenesis in the Human Fallopian Tube

Organism
Homo sapiens
Samples
12
Type
Expression profiling by high...
Submitted
2020-05-26

The human fallopian tube harbors the cell-of-origin for the majority of high-grade serous “ovarian” cancers (HGSCs), but its cellular composition, particularly of the epithelial component, is poorly characterized. We subjected 12 fallopian specimens from 8 patients to single-cell transcriptomic profiling, analyzing around 53,000 individual cells to map the major immune, fibroblastic and epithelial cell types present in this organ. We identified 10 epithelial sub-populations, characterized by div...

Provenance — who produced it, who reused it

Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Huy Q DinhXianzhi LinForough AbbasiKate Lawrenson
Reused by

5 further papers cite this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.003 measured
pct q20 bases 71.3 measured
pct q30 bases 55.5 measured
gc content pct 44.7 measured
mean read length 151 measured
mean base quality 27.6 measured
adapter content pct 0.01 measured
duplication rate pct 0.01 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 55.5 measured ×1 0%
mean base quality 27.6 measured ×0.6 0%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 0.01 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0