GSE152722

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Mus musculus bulk RNA-seq. Grade A (98/100) with outstanding metrics across the board: 96.9% Q30, low duplication (34.41%), and no detectable adapter contamination. Supplementary files available in TXT format. Excellent candidate for meta-analyses and cross-study integration.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Files available

TXT

Metrics (value · how obtained)

n content pct 0.003 measured

pct q20 bases 98.7 measured

pct q30 bases 96.9 measured

gc content pct 48.6 measured

mean read length 51 measured

mean base quality 36.8 measured

adapter content pct 0 measured

duplication rate pct 34.41 measured

supplementary file types TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%

mean base quality 36.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 34.41 measured ×0.4 90%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 100

Differential Gene Expression and Methylation Analysis of Mel... L1 100/100