Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
← Dataset search

GSE152775

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

91/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse 40 bp short-read RNA-seq with excellent Q30 rate (95.6%) and notably elevated GC content (64.1%), consistent with sequencing of GC-rich transcripts or small RNAs with biased composition. Mean base quality of 37.1 and minimal adapter retention indicate clean library. Searchable for mouse transcript profiling with GC-skewed samples.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 97.6 measured
pct q30 bases 95.6 measured
gc content pct 64.1 measured
mean read length 40 measured
mean base quality 37.1 measured
adapter content pct 0.43 measured
duplication rate pct 54.02 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 91/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%
mean base quality 37.1 measured ×0.6 100%
adapter content pct 0.43 measured ×0.4 100%
duplication rate pct 54.02 measured ×0.4 47%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0