Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE153434

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 22 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

21 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk-RNA-seq with 150 bp reads achieved 96.5% Q20 and 91% Q30 across 710 million bases, providing sufficient length for isoform detection. The 44.9% GC and elevated 0.92% adapter contamination suggest minor library contamination; after trimming, supports comprehensive transcript profiling and splicing analysis in human tissues.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.008 measured
pct q20 bases 96.5 measured
pct q30 bases 91 measured
gc content pct 44.9 measured
mean read length 150 measured
mean base quality 37.9 measured
adapter content pct 0.92 measured
duplication rate pct 27.88 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91 measured ×1 100%
mean base quality 37.9 measured ×0.6 100%
adapter content pct 0.92 measured ×0.4 100%
duplication rate pct 27.88 measured ×0.4 100%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 75