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The spatial landscape of gene expression isoforms in tissue sections
Mouse brain 10x Genomics Visium Spatial Transcriptomics profiles sequence either with Illumina for standard profiling and Nanopore promethION long read sequencer for full-length profiling.
Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Kevin LebrigandJoseph BergenstråhleKim ThranePascal BabryRainer WaldmannJoakim Lundeberg
Reused by
- Polony gels enable amplifiable DNA stamping and spatial transcri... 2022 · 155 cites
- The spatial landscape of gene expression isoforms in tissue sect... 2023 · 78 cites
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently