Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE154102

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse 150 bp paired-end RNA-seq with strong Q30 composition (93.4%) and elevated GC content (54.1%), suggesting robust sequencing of GC-rich transcript regions. Mean base quality of 38.6 and minimal adapter content support reliable expression measurement. Applicable to mouse bulk transcriptome searches.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.064 measured
pct q20 bases 97.4 measured
pct q30 bases 93.4 measured
gc content pct 54.1 measured
mean read length 150 measured
mean base quality 38.6 measured
adapter content pct 0.57 measured
duplication rate pct 16.76 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.4 measured ×1 100%
mean base quality 38.6 measured ×0.6 100%
adapter content pct 0.57 measured ×0.4 100%
duplication rate pct 16.76 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0