Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE157560

GEO first seen 2020

pan-Kinase degrader response time course

Organism
Homo sapiens
Samples
24
Type
Expression profiling by high...
Submitted
2020-09-06

Targeted protein degradation (TPD) refers to the use of small molecules to induce ubiquitin-dependent degradation of proteins. These degrader molecules are of great interest in drug development as they can address previously inaccessible targets. However, degrader discovery and optimization remains an inefficient and empirical process due to a lack of understanding of the key molecular events required to successfully induce target degradation. Here we used a time-course experiment to assess the...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Katherine A DonovanJonathan W BushmanEric S Fischer

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
BGISEQ-500
Platform
BGISEQ
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
24 / 24 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 31685696400 reported
total reads 633713928 reported
supplementary file types CSV reported
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently