Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE157654

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse 91 bp RNA-seq with solid quality metrics (Q30: 93.9%, mean 35.9) and balanced GC composition (48.5%), representing reliable bulk transcriptome sequencing. Minimal adapter content and modest read length make this suitable for cost-effective mouse expression studies. Relevant for moderate-throughput mouse transcriptomics.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.007 measured
pct q20 bases 97.6 measured
pct q30 bases 93.9 measured
gc content pct 48.5 measured
mean read length 91 measured
mean base quality 35.9 measured
adapter content pct 0.14 measured
duplication rate pct 42.8 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 0.14 measured ×0.4 100%
duplication rate pct 42.8 measured ×0.4 72%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0