ImmGen Microarray Phase 1
Gene-expression microarray datasets generated as part of the Immunological Genome Project (ImmGen). Primary cells from multiple immune lineages are isolated ex-vivo, primarily from young adult B6 male mice, and double-sorted to >99% purity. RNA is extracted from cells in a centralized manner, amplified and hybridized to Affymetrix 1.0 ST MuGene arrays. Protocols are rigorously standardized for all sorting and RNA preparation. Data is released monthly in batches of cell populations.
Provenance — who produced it, who reused it
Linked to 43 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- Structural Remodeling of the Human Colonic Mesenchyme in Inflamm... 2018 · 735 cites
- Wishbone identifies bifurcating developmental trajectories from... 2016 · 631 cites
- The Human Cell Atlas bone marrow single-cell interactive web por... 2018 · 272 cites
- Single-Cell RNA Profiling of Glomerular Cells Shows Dynamic Chan... 2019 · 213 cites
- Prioritizing Parkinson’s disease genes using population-scale tr... 2019 · 168 cites
- Systemic Analysis of PPARγ in Mouse Macrophage Populations Revea... 2012 · 164 cites
- The murine Microenvironment Cell Population counter method to es... 2020 · 154 cites
- Natural variation of macrophage activation as disease-relevant p... 2017 · 124 cites
- Tristetraprolin Impairs Myc-Induced Lymphoma and Abolishes the M... 2012 · 120 cites
- The islet-resident macrophage is in an inflammatory state and se... 2017 · 113 cites
- Network-based screen in iPSC-derived cells reveals therapeutic c... 2020 · 106 cites
- A timer for analyzing temporally dynamic changes in transcriptio... 2018 · 101 cites
- Myc-induced SUMOylation is a therapeutic vulnerability for B-cel... 2014 · 95 cites
- Differential splicing across immune system lineages 2013 · 94 cites
- The Tumor Microenvironment Shapes Lineage, Transcriptional, and... 2014 · 75 cites
27 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently