GSE159280

GEO first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Translation and Replication Dynamics of Single RNA Viruses 2020 · 102 cites

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human 26 bp short-read dataset with exceptional Q30 rate (97.8%) but marked GC depression (25.9%), consistent with small-RNA or microRNA-enriched library sequencing. No adapter contamination and mean quality of 34.7 indicate clean sample processing. Searchable as human small-RNA transcriptomics or mature miRNA expression.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.002 measured

pct q20 bases 98.4 measured

pct q30 bases 97.8 measured

gc content pct 25.9 measured

mean read length 26 measured

mean base quality 34.7 measured

adapter content pct 0 measured

duplication rate pct 97.39 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.8 measured ×1 100%

mean base quality 34.7 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 97.39 measured ×0.4 0%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0