Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE159354

GEO

Provenance — who produced it, who reused it

Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

4 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
52 / 48 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 2180912878224 reported
total reads 17477446357 reported
n content pct 0.001 measured
pct q20 bases 99.2 measured
pct q30 bases 97.3 measured
gc content pct 45 measured
mean read length 28 measured
mean base quality 38.9 measured
adapter content pct 0 measured
duplication rate pct 16.31 measured
supplementary file types H5 reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.3 measured ×1 100%
mean base quality 38.9 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 16.31 measured ×0.4 100%
QC cost 51 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 85