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Single Cell RNAseq on Renal adenocarcinoma
We used droplet based Single cell RNA sequencing (10x genomics) on sorted cell from tumor and juxta tumor tissue to explore myeloid cell diversity and metabolism in tumor microenvironement
Provenance — who produced it, who reused it
Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Rafael J ArgüelloAlexis J CombesMatthew F Krummel
Reused by
- Discovering dominant tumor immune archetypes in a pan-cancer cen... 2021 · 172 cites
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 / 2 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
172831240855
reported
total reads
1899244405
reported
supplementary file types
MTX, TSV
reported
QC cost
8 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently