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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- A pig BodyMap transcriptome reveals diverse tissue physiologies... 2021 · 141 cites
Deep data QC
98/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
What this means
claude:haiku This pig RNA-Seq with unavailable details shows high quality (95% Q30) and long mean read length of 150 bp. Missing metadata gaps prevent assessment.
Data type / assay
bulk-RNA-seq
Organism
Sus scrofa
Metrics (value · how obtained)
n content pct
0
measured
pct q20 bases
98
measured
pct q30 bases
95
measured
gc content pct
51.5
measured
mean read length
150
measured
mean base quality
39.8
measured
adapter content pct
0
measured
duplication rate pct
35
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95
measured
×1
100%
mean base quality
39.8
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
35
measured
×0.4
89%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0