GSE163498

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Exceptionally large human transcriptome dataset from Illumina NovaSeq 6000 with 3.7B reads and good quality (96.5% Q20), enabling ultra-sensitive gene expression profiling and detection of rare isoforms. Massive scale supports both individual-study analysis and robust meta-analysis across samples or conditions.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

271 / 120 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 1131030144256 reported

total reads 3745132928 reported

n content pct 0.001 measured

pct q20 bases 96.5 measured

pct q30 bases 90.8 measured

gc content pct 51.2 measured

mean read length 151 measured

mean base quality 35.4 measured

adapter content pct 3.28 measured

duplication rate pct 14.18 measured

supplementary file types CSV, TSV reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.8 measured ×1 100%

mean base quality 35.4 measured ×0.6 100%

adapter content pct 3.28 measured ×0.4 93%

duplication rate pct 14.18 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0