GSE164310

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Hepatocyte-derived exosomes from early onset obese mice promote... 2021 · 85 cites

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This mouse miRNA-Seq from HiSeq 4000 totals 11.2 billion bases with perfect quality (100% Q30). The exceptional dataset enables sensitive detection of mouse microRNA expression.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

12 / 12 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 11171780112 reported

total reads 219054512 reported

n content pct 0.002 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 52.2 measured

mean read length 51 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 37.49 measured

supplementary file types XLSX reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 37.49 measured ×0.4 83%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0