GSE164648

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Modeling injury and repair in kidney organoids reveals that homo... 2022 · 112 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This large human RNA-Seq from NovaSeq 6000 totals 190.8 billion bases with high quality (93.1% Q30). The substantial depth enables comprehensive transcriptome profiling across genes with variable expression levels.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

24 / 8 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 190829325300 reported

total reads 636097751 reported

n content pct 0.002 measured

pct q20 bases 97.3 measured

pct q30 bases 93.1 measured

gc content pct 51.3 measured

mean read length 150 measured

mean base quality 35.8 measured

adapter content pct 0.86 measured

duplication rate pct 26.29 measured

supplementary file types XLSX reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.1 measured ×1 100%

mean base quality 35.8 measured ×0.6 100%

adapter content pct 0.86 measured ×0.4 100%

duplication rate pct 26.29 measured ×0.4 100%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0