GSE165211

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Cancer-Associated Fibroblasts Promote Aggressive Gastric Cancer... 2021 · 113 cites

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human 76 bp RNA-seq with good basal quality (Q30: 95%, mean 34.6) but strikingly high adapter retention (69.38%), indicating partial or failed adapter removal or legitimate read-length trimming for a specific analysis. This profile limits straightforward reuse and requires adapter-trimming verification. Search: human RNA-seq, 76 bp, adapter-retained or pre-trimmed libraries.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 96.6 measured

pct q30 bases 95 measured

gc content pct 52.1 measured

mean read length 76 measured

mean base quality 34.6 measured

adapter content pct 69.38 measured

duplication rate pct 12.2 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95 measured ×1 100%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 69.38 measured ×0.4 0%

duplication rate pct 12.2 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0