GSE167069

GEO

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human transcriptome sequencing via Illumina HiSeq 2500 with excellent quality metrics (99.2% Q20, 98.6% Q30) and substantial depth (518M reads), providing high-confidence expression profiling. Exceptional base quality and large dataset size support sensitive detection of subtle expression changes and robust meta-analyses.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

14 / 14 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 102877105400 reported

total reads 518320008 reported

n content pct 0.008 measured

pct q20 bases 99.2 measured

pct q30 bases 98.6 measured

gc content pct 50.5 measured

mean read length 100 measured

mean base quality 39.1 measured

adapter content pct 0.01 measured

duplication rate pct 22.93 measured

supplementary file types CSV, TXT reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.6 measured ×1 100%

mean base quality 39.1 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 22.93 measured ×0.4 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0