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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
- LDHA induces EMT gene transcription and regulates autophagy to p... 2021 · 101 cites
Deep data QC
83/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
What this means
claude:haiku This human RNA-Seq from NovaSeq 6000 totals 31.4 billion bases with good quality (82.4% Q30). The dataset enables human transcriptome profiling.
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 / 4 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
31405217674
reported
total reads
103990787
reported
n content pct
0.001
measured
pct q20 bases
90.8
measured
pct q30 bases
82.4
measured
gc content pct
56.6
measured
mean read length
151
measured
mean base quality
33.6
measured
adapter content pct
1.08
measured
duplication rate pct
28.33
measured
supplementary file types
XLSX
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
82.4
measured
×1
62%
mean base quality
33.6
measured
×0.6
93%
adapter content pct
1.08
measured
×0.4
100%
duplication rate pct
28.33
measured
×0.4
100%
QC cost
9 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0