Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE168588

GEO first seen 2021

Liver Transcriptomics from Mice on a Control vs Low Isoleucine Diet

Organism
Mus musculus
Samples
16
Type
Expression profiling by high...
Submitted
2021-03-09

Mice were put on either a control or low isoleucine diet and their liver transcriptomic expression was measured in both the fasting and fed state. This was to discover the impact of reducing a single branched chain amino acid on the metabolism of the liver.

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Cara L GreenNicole E RichardsonDeyang YuDudley W Lamming

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This mouse RNA-Seq with unavailable details shows high quality (95.6% Q30) and long mean read length of 101 bp. Missing metadata prevent characterization.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 97.9 measured
pct q30 bases 95.6 measured
gc content pct 47.6 measured
mean read length 101 measured
mean base quality 36 measured
adapter content pct 1.21 measured
duplication rate pct 47.68 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%
mean base quality 36 measured ×0.6 100%
adapter content pct 1.21 measured ×0.4 100%
duplication rate pct 47.68 measured ×0.4 61%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0