GSE169471

GEO

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

38/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads), BAM/CRAM (aligned)

N numbers (samples, groups)

6 / 11 runs

Completeness

54.5%

Metrics (value · how obtained)

checksum ok yes reported

total bases 54353316298 reported

total reads 511228864 reported

n content pct 0.014 measured

pct q20 bases 76.5 measured

pct q30 bases 66.2 measured

gc content pct 47.2 measured

mean read length 98 measured

mean base quality 29 measured

adapter content pct 0.04 measured

duplication rate pct 25.83 measured

supplementary file types H5 reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 38/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 66.2 measured ×1 0%

mean base quality 29 measured ×0.6 17%

adapter content pct 0.04 measured ×0.4 100%

duplication rate pct 25.83 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0