Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE171076

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 51 bp short-read RNA-seq with excellent quality metrics (Q30: 97.9%, mean quality 39.6), indicating high-fidelity sequencing or aggressive read trimming. Minimal adapter content and strong base quality make this suitable for precision RNA quantification studies. Relevant for targeted human transcriptomics searches.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.015 measured
pct q20 bases 99.3 measured
pct q30 bases 97.9 measured
gc content pct 49.9 measured
mean read length 51 measured
mean base quality 39.6 measured
adapter content pct 0.86 measured
duplication rate pct 47.13 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.9 measured ×1 100%
mean base quality 39.6 measured ×0.6 100%
adapter content pct 0.86 measured ×0.4 100%
duplication rate pct 47.13 measured ×0.4 62%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0