← Dataset search
Provenance — who produced it, who reused it
Linked to 4 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
81/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 / 8 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
103561684500
reported
total reads
345205615
reported
n content pct
0.003
measured
pct q20 bases
97.3
measured
pct q30 bases
92.6
measured
gc content pct
52
measured
mean read length
150
measured
mean base quality
38.4
measured
adapter content pct
16.03
measured
duplication rate pct
45.7
measured
supplementary file types
TXT
reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 81/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
92.6
measured
×1
100%
mean base quality
38.4
measured
×0.6
100%
adapter content pct
16.03
measured
×0.4
22%
duplication rate pct
45.7
measured
×0.4
65%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0