Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE173343

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human bulk RNA-seq with moderate Q30 base quality (82.3%), the primary limiting metric reducing per-base confidence. Trace adapter contamination (0.54%) is minor; moderate duplication (19.46%) may bias expression estimates. Suitable for exploratory work with QC-filtering pre-alignment.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Files available
TXT
Metrics (value · how obtained)
n content pct 0.125 measured
pct q20 bases 92 measured
pct q30 bases 82.3 measured
gc content pct 49.1 measured
mean read length 100 measured
mean base quality 33.9 measured
adapter content pct 0.54 measured
duplication rate pct 19.46 measured
supplementary file types TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.3 measured ×1 62%
mean base quality 33.9 measured ×0.6 98%
adapter content pct 0.54 measured ×0.4 100%
duplication rate pct 19.46 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 95