Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE178859

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 121 bp single-end RNA-seq with moderate Q30 rate (93.8%) and slightly depressed GC content (45.1%), consistent with standard short-insert library construction. Mean base quality of 35.9 and low adapter content support routine expression analysis. Searchable as human bulk RNA-seq, single-end transcriptomics.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.01 measured
pct q20 bases 97.6 measured
pct q30 bases 93.8 measured
gc content pct 45.1 measured
mean read length 121 measured
mean base quality 35.9 measured
adapter content pct 2.86 measured
duplication rate pct 45.05 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 2.86 measured ×0.4 95%
duplication rate pct 45.05 measured ×0.4 67%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0