Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE180964

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse 51 bp short-read RNA-seq with high Q30 rate (94.9%) and balanced GC content (49.5%), reflecting reliable small-insert library sequencing. Mean base quality of 36.2 and minimal adapter content indicate clean sample processing. Relevant for mouse short-read expression profiling or transcript discovery.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 98.3 measured
pct q30 bases 94.9 measured
gc content pct 49.5 measured
mean read length 51 measured
mean base quality 36.2 measured
adapter content pct 0.05 measured
duplication rate pct 27.18 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%
mean base quality 36.2 measured ×0.6 100%
adapter content pct 0.05 measured ×0.4 100%
duplication rate pct 27.18 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0