Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE182109

GEO first seen 2023

A glioma immune cell atlas identifies prognostic macrophage signatures and a novel immunotherapy target, S100A4

Organism
Homo sapiens
Samples
44
Type
Expression profiling by high...
Submitted
2021-08-14

Here, we report defining molecular signatures of immune-suppressive and inflammatory immune cells in human gliomas. We identified nine robust macrophage subtypes with distinct molecular signatures, each of which predicted good or poor survival for glioma patients. Our analysis of signature genes associated with immune suppressive macrophages, underscored S100A4 as a strong candidate for in vivo validation.

Provenance — who produced it, who reused it

Linked to 34 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Nourhan AbdelfattahKyuson Yun
Reused by

31 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
DNBSEQ-G400
Platform
DNBSEQ
Read type
short-read
Files available
BAM/CRAM (aligned)
N numbers (samples, groups)
44 / 44 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok no reported
total bases 1554577328505 reported
total reads 10894574610 reported
supplementary file types MTX, TSV reported
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently