GSE182338

GEO

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

120 / 120 runs

Completeness

100%

Metrics (value · how obtained)

checksum ok yes reported

total bases 224323266165 reported

total reads 4398495415 reported

n content pct 0.006 measured

pct q20 bases 96.9 measured

pct q30 bases 93.9 measured

gc content pct 48.9 measured

mean read length 51 measured

mean base quality 35.4 measured

adapter content pct 0.04 measured

duplication rate pct 27.75 measured

supplementary file types CSV reported

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

mean base quality 35.4 measured ×0.6 100%

adapter content pct 0.04 measured ×0.4 100%

duplication rate pct 27.75 measured ×0.4 100%

QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0