Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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GSE183436

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 150 bp paired-end RNA-seq with reliable quality metrics (Q30: 96.2%, mean 36.4) and negligible adapter content, indicating well-executed standard Illumina sequencing. Balanced nucleotide composition (GC 49.9%) and consistent base quality support quantitative expression studies. Searchable as human bulk RNA-seq, paired-end transcriptomics.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 98.9 measured
pct q30 bases 96.2 measured
gc content pct 49.9 measured
mean read length 150 measured
mean base quality 36.4 measured
adapter content pct 0.01 measured
duplication rate pct 63.79 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 63.79 measured ×0.4 25%
QC cost 39 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0