Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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GSE185624

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 150 bp paired-end RNA-seq with lower-tier quality metrics (Q30: 85.5%, mean 34.1) and high adapter retention (31.23%), suggesting moderate sequencing fidelity or incomplete trimming. Despite quality limitations, 150 bp paired-end reads may support genome mapping. Useful for researchers with relaxed quality thresholds for human transcriptomics.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0.001 measured
pct q20 bases 91.8 measured
pct q30 bases 85.5 measured
gc content pct 42.8 measured
mean read length 150 measured
mean base quality 34.1 measured
adapter content pct 31.23 measured
duplication rate pct 29.91 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.5 measured ×1 78%
mean base quality 34.1 measured ×0.6 100%
adapter content pct 31.23 measured ×0.4 0%
duplication rate pct 29.91 measured ×0.4 100%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0