GSE185698

GEO first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Targeting senescence-like fibroblasts radiosensitizes non–small... 2021 · 118 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human 144.2 bp paired-end RNA-seq with strong quality characteristics (Q30: 96.1%, mean 39.4), representing high-confidence sequencing with excellent base accuracy. No adapter contamination and balanced GC composition (51.2%) support sensitive expression detection. Applicable to human high-quality bulk transcriptome searches.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0 measured

pct q20 bases 98.8 measured

pct q30 bases 96.1 measured

gc content pct 51.2 measured

mean read length 144.2 measured

mean base quality 39.4 measured

adapter content pct 0 measured

duplication rate pct 28.37 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.1 measured ×1 100%

mean base quality 39.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 28.37 measured ×0.4 100%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0