GSE188288

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Single-Cell Analysis Reveals the Range of Transcriptional States... 2022 · 154 cites

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Human 91 bp RNA-seq with moderate-to-good quality indicators (Q30: 92.6%, mean 35.7) and minimal adapter content, reflecting competent single-end or trimmed paired-end library construction. GC composition of 46.1% is slightly depressed but within normal range. Searchable for human transcript profiling at moderate read depth.

Data type / assay

bulk-RNA-seq

Organism

Homo sapiens

Metrics (value · how obtained)

n content pct 0.007 measured

pct q20 bases 97 measured

pct q30 bases 92.6 measured

gc content pct 46.1 measured

mean read length 91 measured

mean base quality 35.7 measured

adapter content pct 0.44 measured

duplication rate pct 26.06 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.6 measured ×1 100%

mean base quality 35.7 measured ×0.6 100%

adapter content pct 0.44 measured ×0.4 100%

duplication rate pct 26.06 measured ×0.4 100%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0