Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

GSE18927

GEO first seen 2012

University of Washington Human Reference Epigenome Mapping Project

Organism
Homo sapiens
Samples
758
Type
Genome binding/occupancy pro...
Submitted
2009-11-06

The NIH Roadmap Epigenomics Mapping Consortium aims to produce a public resource of epigenomic maps for stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease. Study of chromatin accessibility and expression using exon arrays. **************** For data usage terms and conditions, please refer to: http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies...

Provenance — who produced it, who reused it

Linked to 28 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
John Stamatoyannopoulos
Systematic Localization of Common Disease-Associated Variation i... 2012
An expansive human regulatory lexicon encoded in transcription f... 2012
Human body epigenome maps reveal noncanonical DNA methylation va... 2015
Cell-of-origin chromatin organization shapes the mutational land... 2015
Large-scale identification of sequence variants influencing huma... 2015
Reduced local mutation density in regulatory DNA of cancer genom... 2013
Reused by

10 further papers cite this accession but reuse could not be confirmed.

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
methylation
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1,802 / 758 runs
Completeness
100%
Metrics (value · how obtained)
checksum ok yes reported
total bases 2942764726498 reported
total reads 57331527127 reported
supplementary file types BAM, BED, CEL, TXT, WIG reported
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently