Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE189779

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human 50 bp single-end RNA-seq with acceptable quality (Q30: 92.3%, mean 35.2) and no adapter contamination, suitable for rapid or cost-constrained transcriptome profiling. Balanced GC content (50%) and minimal ambiguous bases indicate standard library preparation. Search terms: human RNA-seq, 50 bp single-end expression.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Metrics (value · how obtained)
n content pct 0 measured
pct q20 bases 97 measured
pct q30 bases 92.3 measured
gc content pct 50 measured
mean read length 50 measured
mean base quality 35.2 measured
adapter content pct 0 measured
duplication rate pct 20.99 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.3 measured ×1 100%
mean base quality 35.2 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 20.99 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0