Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE190094

GEO first seen 2022

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse bulk-RNA-seq with 54.9 bp reads at 97.2% Q20 and 92.6% Q30 across 4.7 billion bases combines moderate read length with high base quality. The 46.1% GC and mean quality 35.7 enable reliable transcript abundance estimation; useful for studying tissue-specific expression or developmental transitions, though longer reads would better support isoform-level analysis.

Data type / assay
bulk-RNA-seq
Organism
Mus musculus
Files available
CSV, TXT
Metrics (value · how obtained)
n content pct 0.005 measured
pct q20 bases 97.2 measured
pct q30 bases 92.6 measured
gc content pct 46.1 measured
mean read length 54.9 measured
mean base quality 35.7 measured
adapter content pct 0.01 measured
duplication rate pct 86.23 measured
supplementary file types CSV, TXT reported
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.6 measured ×1 100%
mean base quality 35.7 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 86.23 measured ×0.4 0%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 95