MAQC-II Project: human breast cancer (BR) data set
The human breast cancer (BR) data set (endpoints D and E) was contributed by the University of Texas M. D. Anderson Cancer Center (MDACC, Houston, TX, USA). Gene expression data from 230 stage I-III breast cancers were generated from fine needle aspiration specimens of newly diagnosed breast cancers before any therapy. The biopsy specimens were collected sequentially during a prospective pharmacogenomic marker discovery study between 2000 and 2008. These specimens represent 70-90% pure neoplasti...
Provenance — who produced it, who reused it
Linked to 61 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
- Survival analysis across the entire transcriptome identifies bio... 2021 · 1,740 cites
- Aerobic glycolysis tunes YAP/TAZ transcriptional activity 2015 · 420 cites
- A Three-Gene Model to Robustly Identify Breast Cancer Molecular... 2012 · 328 cites
- TNBCtype: A Subtyping Tool for Triple-Negative Breast Cancer 2012 · 303 cites
- Profiling of residual breast cancers after neoadjuvant chemother... 2012 · 262 cites
- DeepCC: a novel deep learning-based framework for cancer molecul... 2019 · 234 cites
- PAM50 assay and the three-gene model for identifying the major a... 2012 · 201 cites
- Cancer therapies activate RIG-I-like receptor pathway through en... 2016 · 182 cites
- Actin stress fiber organization promotes cell stiffening and pro... 2017 · 182 cites
- In silico Pathway Activation Network Decomposition Analysis (iPA... 2016 · 140 cites
- Gene expression profiles of inflammatory breast cancer: correlat... 2013 · 130 cites
- Anticipatory estrogen activation of the unfolded protein respons... 2014 · 121 cites
- Lactate Dehydrogenase B: A Metabolic Marker of Response to Neoad... 2013 · 116 cites
- The Lineage Determining Factor GRHL2 Collaborates with FOXA1 to... 2019 · 92 cites
- Deep generative neural network for accurate drug response imputa... 2021 · 90 cites
- The cell cycle regulator 14-3-3σ opposes and reverses cancer met... 2015 · 87 cites
- Mechanical cue‐induced YAP instructs Skp2‐dependent cell cycle e... 2017 · 77 cites
44 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently