Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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GSE20809

GEO first seen 2012

Su(Hw)-VC.S2 ChIP-chip

Organism
Drosophila melanogaster
Samples
4
Type
Genome binding/occupancy pro...
Submitted
2010-03-11

modENCODE_submission_331 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determe the locations of 125 chromosomal proteins and histone modifications across the Drosophila melanogaster genome. The proteins and modifications under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPre...

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Deposited / produced by
Gary KarpenSarah ElginAndrey GortchakovGreg ShanowerMichael TolstorukovPeter KharchenkoMitzi KurodaVincenzo PirrottaPeter ParkAki MinodaNicole RiddleYuri SchwartzArt AlekseyenkoCameron Kennedy

Deep data QC

metadata only · no data-level QC for this type

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay
ChIP-seq
Organism
Drosophila melanogaster
Files available
BEDGRAPH, CEL, GFF3
Metrics (value · how obtained)
supplementary file types BEDGRAPH, CEL, GFF3 reported
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently