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Nucleosome map of the IMR90 fibroblast cell line
We produced a map of nucleosome positions in IMR90 by sequencing the ends of MNase-digested chromatin fragments.
Provenance — who produced it, who reused it
Linked to 6 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Deposited / produced by
Benjamin P BermanTheresa K KellyPeter A JonesPeter W Laird
Reused by
- Intragenic DNA methylation modulates alternative splicing by rec... 2013 · 570 cites
- TP53 engagement with the genome occurs in distinct local chromat... 2014 · 131 cites
- Links between DNA methylation and nucleosome occupancy in the hu... 2017 · 84 cites
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
metadata only · no data-level QC for this typeStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
No quantitative QC rubric exists for this data type yet, so it is deliberately left unscored — this is an honest "not applicable", not a poor rating.
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0 · provisional — verify independently